Publications

List of publications, co-authored with our scientific collaborators

• Virtual plates: Getting the best out of high content screens

  SLAS Discov (2023) Nov 29:S2472-5552(23)
  Shapira Lots I, Alroy I

• Measuring mRNA translation in neuronal processes and somata by tRNA-FRET

  Nucleic Acids Res. 2020 ;46(6):e32
  Koltun B, Ironi S, Gershoni-Emek N, Barrera I, Hleihil M, Nanguneri N, Sasmal R, Agasti S, Nair D, Rosenblum K

• A heterogeneous tRNA granule structure exhibiting rapid, bi-directional neuritictransport

  Eur J Cell Biol (2018) ; 97 : 168-179.
  Pilotte J, Chan SW, Farnum JB, Thomas WM, Smilansky Z, Vanderklish PW

• Monitoring protein synthesis in single live cancer cells

  Integr Biol (2016); 8 :645-53
  Chengyi T., Santo L., Mishima Y., Raje N., Smilanski, Z., Zoldan, J.

• DSCR1 is required for both axonal growth cone extension and steering

  J Cell Biol. 2016; 23;213(4):451-62.
  Wang W, Rai A, Hur EM, Smilansky Z, Chang KT, Min KT

• In vivo single-RNA tracking shows that most tRNA diffuses freely in live bacteria

  Nucleic Acid Res. (2017); 45 :926-937
  Plochowietz A, Farrell I, Smilansky Z, Cooperman BS, Kapanidis AN

• Monitoring collagen synthesis in fibroblasts using fluorescently labeled tRNA pairs

  J Cell Physiol. 2014;229(9):1121-9
  Liu J, Pampillo M, Guo F, Liu S, Cooperman BS, Farrell I, Dahary D, Gan BS, O'Gorman DB, Smilansky Z, Babwah AV, Leask A

• Quantifying elongation rhythm during full-length protein synthesis

  J Am Chem Soc. 2013;135(30):11322-9
  Rosenblum G, Chen C, Kaur J, Cui X, Zhang H, Asahara H, Chong S, Smilansky Z, Goldman YE, Cooperman BS

• Dicodon monitoring of protein synthesis (DiCoMPS) reveals levels of synthesis of a viral protein in single cells

  Nucleic Acids Res. 2013;41(18):e177
  Barhoom S, Farrell I, Shai B, Dahary D, Cooperman BS, Smilansky Z, Elroy-Stein O, Ehrlich M

• Dynamics of translation by single ribosomes through mRNA secondary structures

  Nat Struct Mol Biol. 2013; 20(5):582-8.
  Chen C, Zhang H, Broitman SL, Reiche M, Farrell I, Cooperman BS, Goldman YE

• FRET-based identification of mRNAs undergoing translation

  PLoS One. 2012;7(5):e38344
  Stevens B, Chen C, Farrell I, Zhang H, Kaur J, Broitman SL, Smilansky Z, Cooperman BS, Goldman YE

• Quantitative single cell monitoring of protein synthesis at subcellular resolution using fluorescently labeled tRNA

  Nucleic Acids Res. 2011 ;39(19):e129
  Barhoom S, Kaur J, Cooperman BS, Smorodinsky NI, Smilansky Z, Ehrlich M, Elroy-Stein O

• Single-molecule fluorescence measurements of ribosomal translocation dynamics

  Mol Cell. 2011 May 6;42(3):367-77
  Chen C, Stevens B, Kaur J, Cabral D, Liu H, Wang Y, Zhang H, Rosenblum G, Smilansky Z, Goldman YE, Cooperman BS

• Enhancement of single-molecule fluorescence signals by colloidal silver nanoparticles in studies of protein translation

  ACS Nano. 2011;5(1):399-407.
  Bharill S, Chen C, Stevens B, Kaur J, Smilansky Z, Mandecki W, Gryczynski I, Gryczynski Z, Cooperman BS, Goldman YE

• Allosteric vs. spontaneous exit-site (E-site) tRNA dissociation early in protein synthesis

  Proc Natl Acad Sci U S A. 2011;108(41):16980-5
  Chen C, Stevens B, Kaur J, Smilansky Z, Cooperman BS, Goldman YE

• Synthesis and functional activity of tRNAs labeled with fluorescent hydrazides in the D-loop

  RNA. 2009 Feb;15(2):346-54.
  Pan D, Qin H, Cooperman BS